Scaffold DelMOSum2011_c10045033

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10045033
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1808
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F043088	Metagenome	157	N
F047310	Metagenome	150	N
F054920	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100450331	F054920	N/A	RVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDVMEAYSGHTKMFHKENGKWQQL*
DelMOSum2011_100450333	F026714	GGAG	MADKYKKLTIYVSEEQEKVLKDFNVMAIRKEQFPLLHYTVGIISKRLAETNNRMITDVDPNTCDTSTLHLNSQTIE*
DelMOSum2011_100450334	F043088	AGGAG	MKRLEGVYRGFSIFEKDNEWKIEIEGKSMGRFEKIDGVDGKASCMCEIDRVKREERKEIDANIQRVDAQVRLDKNIMKARNNGI*
DelMOSum2011_100450335	F018451	GAG	MVSNKFIDVKSHNPKAVAPKDYKFNKIQHSPKVLEVKNGMLGFEFNGTYIIDPTLDETARFPVSATTYYSISARDRDRMIKANIKV*
DelMOSum2011_100450336	F047310	AGGAG	VQYTGYIVLKHYDKDTKPINTKERLHDTIFLKPEMDIKQKTDLTPEIIPIYTSQKDAEADAEWWPASTYEDYGVVKKVTITIEEETYNTIESERKTLNKLIKDYPQDNLH