Scaffold DelMOSum2011_c10033655

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10033655
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2227
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100336553	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYPEAGGQKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*
DelMOSum2011_100336554	F071633	N/A	LKVVFLILVIYASDGNLSYQKIPFNYSDQPITCEKMYNESIKYVXNPDYKEGNGQVWMLTKYKNKNVIAHWCKDSKGNYVR*
DelMOSum2011_100336555	F005537	AGG	MSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGLFMIFXKCWRVMQSENYKKDSFDDINGYTELLRRLVIDENKTKR*
DelMOSum2011_100336557	F008307	AGTAG	MVKVLKTSSLELEADFEEIFDGATVEEATQKAHNQKMPSEFAKVNITNNKLIKANVKMVGEENDELKK*