Scaffold DelMOSum2011_c10033359

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10033359
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2243
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F031294	Metagenome	183	N
F037204	Metagenome	168	N
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100333592	F031294	AGGAG	MKFEMLDLFLIAMLMVGIFFGLAMLSVHGIGHMTWLSWTMFGCSAWCLVVGWGIVFYNLENXNGS*
DelMOSum2011_100333593	F017755	GGAG	MARKFITPMGKHKPVRSSWAAMDTLAFSRSYEPETRPEFRCYVTGQADAMLDTYRKAKDKADALAILDSLL*
DelMOSum2011_100333595	F037204	AGGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIIDYLQFIHNTEKGXXX*
DelMOSum2011_100333596	F012403	GGAG	MXIKPINPVAKAVAQSRRRASVVPDKTKYNRKKDKQDANQAGKHEESKDN*
DelMOSum2011_100333597	F067120	AGAAGG	MQIKLENMKNQKTTKPDGKRDQWRLHNKRKQNVRRTARRNTQVAQEQSYG*