Scaffold DelMOSum2011_c10032243

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10032243
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2298
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F010275	Metagenome / Metatranscriptome	306	Y
F045712	Metagenome	152	N
F087763	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100322431	F045712	AGGAGG	MPNYNIISQGSTKIAKSNKIQDRYFSRIVYLAPDDLADGKNTLCPYAKIAKC
DelMOSum2011_100322432	F010275	AGGAG	MSNEIDSTVMDNMRDNVHELWVIVGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED*
DelMOSum2011_100322435	F087763	GGAG	MAQMRVKDQDLIVEQVVAKIEATELDKFKAREDVQSIQSVLDTRIDMIQQLWYTYKQYEQNIKDDIKELVELVDDFQQVNSLKESNHYANSTGFRLRKVSNYGSPEVPEYEIDWKLPKSQQRELETKLRLQTMSGDFDVYKLIDELTSEFSS*
DelMOSum2011_100322436	F002593	GGAG	MSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYSETSFLGRLWNRIRYGTPMSINS*