Scaffold DelMOSum2011_c10023066

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10023066
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2904
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F011192	Metagenome / Metatranscriptome	294	Y
F015812	Metagenome / Metatranscriptome	252	Y
F031261	Metagenome	183	Y
F047975	Metagenome / Metatranscriptome	149	Y
F059441	Metagenome	134	N
F100938	Metagenome	102	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100230661	F059441	GGAGG	MKTWSSTIKYTVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE*
DelMOSum2011_100230662	F003976	GGAGG	MSRTYNDYYFEKLDILDTLDKLEMSVRFLNVWVNKPMGLENARYVLEKNANQEFNWFSRDMVKELLEEDDDENN*
DelMOSum2011_100230663	F047975	AGGAGG	MRITKEEWAENTADGMDWKDLYRIAYDVMLDSVKDMSNKEFKEYLIECGYEEVDDDS*
DelMOSum2011_100230664	F011192	AGGAGG	MTAKEMTDNNFINFQDDFYNLLEKYGVSSIDIEHPQFETICNIRNKVVEFIEQETWEEDDEQN*
DelMOSum2011_100230665	F031261	GGAGG	MNRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAIKWDVYIYQGGR*
DelMOSum2011_100230666	F100938	AGGAGG	MSDWLDGTKPKYIECVYETAIEFDLEELDIDYDTIDDYHVRYGTLQVTFKDGTIKSYEGNQMETDYKWARYENVLDESWNKVEGLN*
DelMOSum2011_100230668	F015812	GAG	MNKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRVEEHLSHMVSRSLADAHIGTTHD*
DelMOSum2011_100230669	F106085	AGG	MTNNPLESLRKKLSFLLDNLKNKFRMLIKSKQNNKIIIKKDIKNNIPKHLKGLNNKQLKDLQSLFKKRI*