Scaffold DelMOSum2011_c10022093

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10022093
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2990
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100220932	F051547	GGGGG	MIDPLLIATLSVIGGAILNTFRGFLGSSESTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGITETVLIGLSVGFSVDYAVSKAKKTA*
DelMOSum2011_100220933	F060433	N/A	MEMSSIIEALLIATILGMGGALYGFFRKMSSTQKDLCETVSRLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLDK*
DelMOSum2011_100220934	F071758	N/A	MSDHTCKRCSIPKYGYTDGTHSIYLCYKCGRYEGISGGDEDFVNDINEDPMILLHMIKSKTLIPIS*
DelMOSum2011_100220938	F001235	AGGA	LPTELNTNENANDMTKKLWEKHQGDEYTAVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNKYKFNIEQINGRFCNTCHTRIAKITKEYNAKGGFMKTDPFWISMRKKHGKDWKQIMGGYRKSNRK*