Scaffold DelMOSum2011_c10021672

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10021672
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3030
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010900	Metagenome	297	Y
F051786	Metagenome	143	N
F088882	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100216724	F051786	AGGA	MNTYTIAIRNTFPHGPAYSPADGIPRNLTLIQAEKLAKQARFKGVDCVAFNVASV*
DelMOSum2011_100216725	F088882	GAG	MTMQIRPMQHLNLTYSGNGKYTVTWKGWPSEGFKTVRRVINTEYSSVSDVAPMAARLFAEWLETGPMGEDSKAVIELVTHAHINGDKSAIGVSINWDRKAQ*
DelMOSum2011_100216726	F010900	AGGA	MTTETFIERAQAMIDSAFEYETEHQDAGDNYAHMASEGDFDYYNGESRLQVYCVEMGIDLSGIDIDRLAEDVIFWGYMTQGFDYDAKKRFLVASYHVGEIEQQVESSSLGARFTPYLIAQLNRRTDGYWRYDGPDVAYFYLNCDGRYWDHVCDAETIRDLVNQHKES*