Scaffold DelMOSum2011_c10016238

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10016238
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3688
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F027561	Metagenome	194	Y
F035488	Metagenome	172	N
F042577	Metagenome	158	N
F097475	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100162382	F042577	GGAG	MSLRAYHKGTRKKIEKLIKEHVDEMRKHYPWDGEHEAVTKEIIKLFRQDS*
DelMOSum2011_100162383	F097475	AGGA	LIDKESLEVKLKKLVDLCTENEPTDKEMKKHFLFDAHQIQAYGMYRTIQDKFEFLTSEDIIDIMKSANILWKIQNGKLPNSTIRDWMEVLNEEIETLMRDGNSIGAIKEYRSTTLKYSGVQPTLRESKEYVDRYMDSVEKNFTKNRSVV*
DelMOSum2011_100162386	F012123	AGGAG	VNKRNPCRINKVEYKSDGTHIVERRGYAQERRTFDGEQMVFVMEGGDTQIGYWYPMDEVTMTKGKWTNDTGVVISRKSFWRRSK*
DelMOSum2011_100162388	F027561	GAG	MENDKKITKEYYDKLINDYVDGKTRIKGDHPEEIKTAIDSFFHAGKMLVDHPEVGVIPPEYVEKLLASLAHHPEYHELLIELIRILQRGEEG*
DelMOSum2011_100162389	F035488	AGGGGG	MTYYILMPGDNPNELWDNNELGQVSFKKFYVGKGMEALQNMIRKSPEALENVTIRSERGDKYSVQQFLELIGEYTIC*