Scaffold DelMOSum2011_c10015283

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10015283
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3839
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007947	Metagenome / Metatranscriptome	342	Y
F011124	Metagenome / Metatranscriptome	295	Y
F032478	Metagenome / Metatranscriptome	180	N
F037204	Metagenome	168	N
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1001528311	F007947	GAG	MLDCNTILCLQNQMPDVGMDDLLVIGYLVGGLGILIYLVMDALKEK*
DelMOSum2011_1001528313	F032478	GAGG	MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHVELEFVKEFDSE*
DelMOSum2011_1001528317	F037204	AGGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIINYLQFIHDTEKGHEN*
DelMOSum2011_100152837	F011124	AGGAG	MFDPDKSYSVLVWDMPVAVWDDDADDYIRNEDGSVKLFEIPNYDYSYICDGIEVDELWEIDA*
DelMOSum2011_100152838	F049286	AGGAG	MPKYEVTRSYSVSSVATVEADSHEHAEEIALHDADVYWKEYDGDYDAEITVEEIDDV*