Scaffold DelMOSum2011_c10014939

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10014939
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3897
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100149391	F001416	AGG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVASAVDTAGTSATAXTTMDFTVNNAEFSRNASVSKLVDGEPFGASEN
DelMOSum2011_100149392	F030418	AGGCGG	MGIFDAISKIGDLALKPLVSSVFGGPQAGVAALARPPERIQTFETSRSNNNMYQQDPGLSQGFNGVASSTASAGSGSFFGNLGSTIGGFGRDVGGFVQDIAPALNLFGIGGQAQRTNAGTATTIIRQAPDETAQSGEILGANLGMAPALFQAGRNFLRTPGGQTALGFGGAALGAAFAGDGGSAPRITRKMKSDVRRIYMMAGMDPNATAQILNNLGTYPRMNFNASLVFFILTKRFRNDGPVVTKAAVRKTRSTLRRMKGVVDMYNTVCKPTAPRRRAAPSRAKAVQLISNK*