Scaffold DelMOSum2011_c10014539

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10014539
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3970
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010571	Metagenome	302	Y
F015812	Metagenome / Metatranscriptome	252	Y
F020816	Metagenome / Metatranscriptome	222	N
F061778	Metagenome	131	N
F095310	Metagenome / Metatranscriptome	105	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1001453911	F010571	AGGAGG	MSNTTQENYMRNLYEYLYEQHYKDLSTMSDDVEWIENEAERLAEIELDNFEMEG*
DelMOSum2011_100145392	F095310	GAGG	MKMFLIKLLTGIAVFLTMYLAVLILNEDTMENTDEILTLNRKVESLEETLQAVKQQQDYLQIMQKGLRESLNSRTIEVDRRVEEAVDNKFKEQSATGGLGVLTNEQALATEEAVVE*
DelMOSum2011_100145393	F003051	N/A	MKTKILKSKVTIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRWELTQLLDAKWNPDTYRYVKRGSK*
DelMOSum2011_100145395	F106085	AGG	MTNNLLESLRKKLHKTLDKVKNKFTIFKKLKENNKIIINKDNKNNIPNHLKDLSKENLQTLQELYKEKMXYGS*
DelMOSum2011_100145396	F015812	AGGAG	MNKTLYKRLEDICAREYVINKLTEDKFRTFVDFLYDDIRTWDNPLDVSDTDVMYRIEEHLSHMVARILTDTHIGTIHD*
DelMOSum2011_100145398	F061778	GGAGG	MNRYRVAVHYEEGFTVDVKAPNSKEASKVAEEFVSANCGVSESFDNVGEDESKFIKAYHRDYWIVGER*
DelMOSum2011_100145399	F020816	AGGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWDVYKDTLKITEVKTWEEDDE*