Scaffold DelMOSum2011_c10004634

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10004634
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8113
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F024924	Metagenome	204	N
F070149	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000463411	F024924	GGAG	MKKRLTKSQRAINSAKFEDIKSTKHRIIVSFNDEEKAKRYLRSKGYRYQEVYSFKEDRALLYKNFKNSWVKLASSFDYLNDNTMEMGTVWNIEIL*
DelMOSum2011_1000463413	F002593	GGAG	MSKLIYSRNGSETTESIDNASPMIKAIWNQAHFFGANIVRVRAEKNRFGNDTGRTFNSFHHGRVSVYKQKNKVHENNALYFARKIPLTKVNKGMQILEVASSLDVQNTLDTIDAIQYYSETSFLGRLWNRIRYGTPMSITA*
DelMOSum2011_1000463415	F070149	AGGAG	MQTIYQIVEEVCARDFPILARLSYIQQTKLIDIIYKDVMSGDNPTEIAEHKLYDYVEEFIAKAISVYLDDFVDSYKENTNA*