Scaffold DelMOSum2011_c10004289

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10004289
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8507
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F020445	Metagenome / Metatranscriptome	224	N
F072753	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000428913	F017045	GGA	MAAKSNSLLRRYDKLNKLHREIMQKPKSNSRQCVHSLQAFKKYIKTFRQIVVVENGDATFKYTQL*
DelMOSum2011_1000428915	F072753	AGGA	MKLKNNGHIYLSKIKYDVLKYISTFIKQHRYSPTYKEIAVKFKFSRARAGAIVAELFKLNLISKGGSAHRKIRLTETQTDSIPTLLYNKEYSAMDLRR*
DelMOSum2011_1000428917	F020445	AGGA	MADNNYDNSGAMWKRQPRDTDKPGGKYPQYQGNIQIGGVKKNLAAWLNVDKTKDTQPDISLKISDIVAKEDAPF*
DelMOSum2011_1000428920	F016292	N/A	MDNRINIVGDCYKKFDLKHTSKSQNTIPDDIRFRNYILLTKKEKANLPTNCSFTGGTISHEIIQAMKCQDKTYAEALKLSQHKIDNYVAVDTKDELKFGHIVSNLESLVNNHIENINEIGKQKWDAELEYTYWAKGIATYFLSYVDLVGKTHFGDIKNVFGTLTKTKAGFSYSKRKCPRVPFHSDCLQIALYSKLLPKHKPFLTYASDSDRVVFTEENCVELRKENLEYYYNELIIYQKCWEKKLELANGDIKTLAMLCRPDFSEIRKNSFWWKGIDSTIIERFRACYE*