Scaffold DelMOSum2011_c10003827

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10003827
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9111
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F011529	Metagenome / Metatranscriptome	290	Y
F045374	Metagenome / Metatranscriptome	153	Y
F076496	Metagenome / Metatranscriptome	118	N
F080496	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000382712	F011529	GGAG	MWIKESKRKTIDTLEGIRLRSARLWLDKDGFHPFLDQDTLIKPDLQKSMGCKYNELPKEAWDTMDRYDESIAKRSIYAT*
DelMOSum2011_1000382713	F080496	AGGA	MNNKEHNENMESIRSSYDSIMKSGYSIMGVMILWIGIEIGMLL*
DelMOSum2011_1000382714	F076496	AGGAG	MARSKEAQDFIDANPDKFRVVSPEETAKTLEKQSGGYFKGQSVMGPSKKKGKSS*
DelMOSum2011_1000382721	F045374	AGGAG	MICHECNSEPFEVVIKEELGYEHEVAEFEIEVTHCPFCGSNLEWAKRGGYDADEYDNDEDRLDV*
DelMOSum2011_100038276	F004630	GGAG	MNNTKLMNEYYKDDGSVAKVYQVVTGMDGERSYFSITYKDPDGNRIMREDFPYKALRYVEDAAENWTKGIKLLKG*