Scaffold DelMOSum2011_c10002659

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10002659
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11189
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y
F025596	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000265913	F025596	N/A	MSKYTNTLVNLSYLFGMAILILGLVDRKMRLMDVSDAQWFILSLVLGIFFPILLNALLFKKFSIHFWNKFN*
DelMOSum2011_100026596	F007392	N/A	MFFCSLAFSEDFNLICEGERKVRYFSGKEFNVTNFESVLLKINNNAMEYIGVNSGRSYLFSNREYTAPKWAPHEDIKITEQYQYTPKKIKASQTIADXGXSEESSISLFSLDVNLLTGELNEMEIIRNKQTNVKSMSNNFQALCKREDRSY*
DelMOSum2011_100026597	F005012	AGG	MNLEVIKTILISLLLFPSIVFANDFEMLCKGEEVKYLKEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSYVKSKDNITGVRSFSTNALIEGRMIHTSKIDKVEINILTNDIFWTHEFNRGDKTNNEAKTIYAFRKNFQGKCK*
DelMOSum2011_100026598	F012576	N/A	MNTLLAYIQFIFIGLVIYGAVLTFGNISVNTSISGIAAPILAWFAGTGLRASFNTDNNQKKGSIFMAVIILVISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISEPNTNS