Scaffold DelMOSum2011_c10002567

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10002567
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11415
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F047687	Metagenome / Metatranscriptome	149	N
F054053	Metagenome / Metatranscriptome	140	N
F072428	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000256713	F047687	N/A	MKASDIAKFTKTNYGQLASHARGLIVKDMNNGVMQNGIKKYKSKEYAAKKATGALGKFRKSDRVTMLLSGETARRIRPEGKRDRATLVYERGTIVQANEDRGYVIADLSPKNRDKSALFLQKIVDRNVKKYESKPIKIKIGK*
DelMOSum2011_1000256716	F054053	AGG	MVMFLLGMSVGIIVSMISAMVWGYRLSIKEEELSREMIKDFQDRFLETEEQKFYKRYES*
DelMOSum2011_100025672	F072428	GGA	MDLGETIKRLKELSAILQANTISDREKEYYLPEMFRLIDKLEVPQLIGEFSNDYIS*
DelMOSum2011_100025678	F003637	AGGA	MAKVIARKIDETTTAPKRVEIKHTRVMQDASGKDVEILQNVEIKLVDEAILQCEAHKANLEAQLAECEAELADYIAIRDAE*