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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000115 Open in IMG/M |
| Scaffold ID | DelMOSum2011_c10001126 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17811 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (79.41%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030768 | Metagenome / Metatranscriptome | 184 | Y |
| F050424 | Metagenome | 145 | N |
| F073577 | Metagenome / Metatranscriptome | 120 | N |
| F090413 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2011_1000112619 | F030768 | AGGAG | MAFVNLKDLKANVGGQLRLTLNSAGVYEEKEWQGKKFNTFKYEVIQDGTISTLDATDALKRKLDAIPQGSDFLLSWEQFTTDEGQLRNYWKAEPVSKDSANPVFENVKKSINEFDQKLQADKAVKQAVETTNQAYSNPARMGMIFNNTIKLYIANDMSWTTDEFVNNFQRVEAWVEACEDKPGTPVSNNLEKLQEKRIEANTPSEAVEIKADDLPF* |
| DelMOSum2011_100011265 | F050424 | GAGG | MGIEFENIYKDRVIDTIQKLLKQNLASIPVVFDEHRGQESFLIVPEADAFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGIVSSVEYTRDEEDETISNVIITFQXNTNEVIS* |
| DelMOSum2011_100011266 | F090413 | GAGG | MKYKHIKGLQLQKPSYLSTSNQKIRELLAGGEVELEKENLEEFESLGVQVQPVKKQKPKKKEEK* |
| DelMOSum2011_100011268 | F073577 | AGGAG | MKVKMFDKEWEVKNPTYKEKRELWKLNTMTFEGDKMNQDKYFQLLERVEEISGLNPEDYVNKNDDKLGMNNIDSLLQQIFLSYMGLSDDSKKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |