Scaffold DelMOSum2011_c10000649

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10000649
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23384
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (56.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F049294	Metagenome / Metatranscriptome	147	Y
F050009	Metagenome	146	N
F085808	Metagenome	111	Y
F104049	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000064915	F104049	N/A	MPQNRDLKLYTEDQVWKFVTQAITRVLYDAIATHEAHGEHSIEVGWLRDYTDNIAITFPRIDPPNE*
DelMOSum2011_1000064917	F049294	GAG	MSAGNLRYYALGAYTGLVALWTATNQIALDEASSVALLAPIAIVIGADYIKHKNDSA*
DelMOSum2011_1000064927	F050009	AGGAG	MPRGKQSGISYGQKKQYGQSDTAQLIAIASYLRKKYKTKVKREAYLIFNINNKLIKIKEYVTKADLNDCTAKNPDLLWIDKYGMWIVEVDGAVHDRKVEKTNQRNELFRNNNIKLIVVNLADCKELELDIYDYIDSEILRLIKNE*
DelMOSum2011_1000064940	F085808	AGGAGG	LSNSAIWQVQASGSATESSAGNNYTIDFNATSKLPSAGAYISDITVNFRRAVPENEAVATDNNELQDMGIDGLDITLEGVIGDADNDSDTANSVNKLKNWIQAGNTVTGYTKGRYGLRLDNAPQWNVVPHANYGYHIRDIKLNYIGENKDLVHFVILMALGGDIASAI*
DelMOSum2011_1000064942	F023365	N/A	MGNLGEIAEIVNASELTLEVGSDNYILLTNLSLHIGRPEDRVATTDGGALFTYGKGDNYFTATLLVSTPELTTLNALGQIDSDGDMTSTAWKIVAKNVAGATKTFSATGILRDYDISKPSEGKVSIDIFVRITGDTISIS*
DelMOSum2011_1000064945	F015345	N/A	LTTVDIFGIKERIVDILKSDTSNLWDSTPSSKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSHVAVIENNAHLGEEYDIRIKILFVVEAKDGSKTEENIDDFTKSIIEKLETNYDLRDGAESTRLAEASQVTQIMDLPSMFRGDRVKGRVIKFKVIVRT*