NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2011_c10000649

Scaffold DelMOSum2011_c10000649


Overview

Basic Information
Taxon OID3300000115 Open in IMG/M
Scaffold IDDelMOSum2011_c10000649 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)23384
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (56.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015345Metagenome / Metatranscriptome255Y
F023365Metagenome210Y
F049294Metagenome / Metatranscriptome147Y
F050009Metagenome146N
F085808Metagenome111Y
F104049Metagenome101N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2011_1000064915F104049N/AMPQNRDLKLYTEDQVWKFVTQAITRVLYDAIATHEAHGEHSIEVGWLRDYTDNIAITFPRIDPPNE*
DelMOSum2011_1000064917F049294GAGMSAGNLRYYALGAYTGLVALWTATNQIALDEASSVALLAPIAIVIGADYIKHKNDSA*
DelMOSum2011_1000064927F050009AGGAGMPRGKQSGISYGQKKQYGQSDTAQLIAIASYLRKKYKTKVKREAYLIFNINNKLIKIKEYVTKADLNDCTAKNPDLLWIDKYGMWIVEVDGAVHDRKVEKTNQRNELFRNNNIKLIVVNLADCKELELDIYDYIDSEILRLIKNE*
DelMOSum2011_1000064940F085808AGGAGGLSNSAIWQVQASGSATESSAGNNYTIDFNATSKLPSAGAYISDITVNFRRAVPENEAVATDNNELQDMGIDGLDITLEGVIGDADNDSDTANSVNKLKNWIQAGNTVTGYTKGRYGLRLDNAPQWNVVPHANYGYHIRDIKLNYIGENKDLVHFVILMALGGDIASAI*
DelMOSum2011_1000064942F023365N/AMGNLGEIAEIVNASELTLEVGSDNYILLTNLSLHIGRPEDRVATTDGGALFTYGKGDNYFTATLLVSTPELTTLNALGQIDSDGDMTSTAWKIVAKNVAGATKTFSATGILRDYDISKPSEGKVSIDIFVRITGDTISIS*
DelMOSum2011_1000064945F015345N/ALTTVDIFGIKERIVDILKSDTSNLWDSTPSSKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSHVAVIENNAHLGEEYDIRIKILFVVEAKDGSKTEENIDDFTKSIIEKLETNYDLRDGAESTRLAEASQVTQIMDLPSMFRGDRVKGRVIKFKVIVRT*

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