Scaffold DelMOSum2011

Basic Information
Taxon OID	3300000115 Open in IMG/M
Scaffold ID	DelMOSum2011_c10000633 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000115 Open in IMG/M

Scaffold ID

DelMOSum2011_c10000633 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	23656
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (54.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23656

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (54.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036977	Metagenome / Metatranscriptome	169	Y
F052263	Metagenome / Metatranscriptome	143	N
F056157	Metagenome / Metatranscriptome	138	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000063316	F052263	AGGA	LSKSSSWAKYRMRENRNNQFRPEQIELYKQLRATNANSELLMEYPVTYTNEQDEKRTAIGDIVDVTKKIFYRLNGAIHNSNKQEEKDWEQKIYLEQLGWKVVDIET*
DelMOSum2011_100006335	F056157	N/A	MAKKKLSQDDFWAQQIIRAQSGGKDYIFALVRRKYSEDDIEPTGPGEYIGIKEKKSYPKVTDNDPDSETFGKRIDKPNAEPTGLKMQYEDEFTPENIKKYQSMFGINDFGETIFIYKFKQISIRADKVDEFWKITQDDAYNKYILKEQVIKIEESKSNTRRRVSKKTG*
DelMOSum2011_100006336	F106115	N/A	MAVATAATIQAHLIGATYPEGTLDANNIFDYAQYTTRRRYPSCEVLTTQPESTVETKRSTDTTIAFEINYFDKNLGLRTDDVSTQRSVENVIMARMETMVLQDYKVVFESKSWTRQSVQRDGSHPAYLVSTLKITVKQVNVTVMPVDGVLQFKVTGSTVDNAPSVDYTYTNVFDVDLQSGYRDIEEGYTGSNIPKHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLTTNGERPSIKFVYTNKTADEVAITNTFTADPESVQMLYKTTDAVVFRLIARLITDITIT*
DelMOSum2011_100006338	F036977	GGTGG	MSLDLTKQRLSSAEERVNRFIDQNLLLWATEEILLPGQTNIASSVSQRASDALTLEKSGFMKVDLKWDFRSEEGAPIHFFLEYGTRPHRIEAKGREHGGADALHWTGPSGESRFAKVVQHPGTEGKNVVATIKEERTPALRERIIKETQNFMEVSSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2011_c10000633

Overview

Ecosystem & Geography

Associated Families

Sequences