Scaffold DelMOSum2011_c10000516

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10000516
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 26404
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (72.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003155	Metagenome / Metatranscriptome	504	Y
F006373	Metagenome	375	Y
F015791	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000051618	F006373	N/A	LWSTITYAVEEYELFSMSMPMMCGTPESVDQYIKDNKFTPINVSFGREKAKPDGVAIFAVTYYINDKQQTLAVAETPTDPYKCMIFHTFDLKMNESLLSGTDT*
DelMOSum2011_1000051631	F015791	N/A	VCGILLVVFLSGCTKTVCVTDTECTKKLDWNNKGFTLFRTVVTNGTNLGK*
DelMOSum2011_1000051645	F003155	GGAGG	MIKNIVIISLVVVIVTGMSGNEFLDYISMGLDKLQQLVYNVKSEVL*