Scaffold DelMOSum2011_c10000494

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10000494
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 27008
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025150	Metagenome / Metatranscriptome	203	Y
F060355	Metagenome / Metatranscriptome	133	Y
F062792	Metagenome / Metatranscriptome	130	N
F091840	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000049434	F025150	GGAG	MIKVTTEGRKFPEFDTFIDECIVALFPEGVTYDINIRFQKFADKTGTHAGFCEGDDIESAIIVGTHWKYEDNETVAYEPHEIASNLAHELTHAKQFCKNQINMIDHVWKHASGTIDCVELEYAETPWEVEAYAYEAILTDLLWENV*
DelMOSum2011_1000049436	F062792	AGGA	MTPQERETHKRKWRMASHFVYHTHTDLRSESKEWCKKNCEQHEWDLKQFTDIYGDTIRFEFEEHFNEFSKWYRTRG*
DelMOSum2011_1000049442	F091840	GGA	MGIVFWVVLIAGTIGAVENTKKINAMCKKEVEEGISETIKECKQYYFDTRIKKGW*
DelMOSum2011_1000049455	F060355	AGGAG	MKIKDDILDKWESGEWTIYDIAEHYCTPVENVLKMLGLVEDPFSYELH*