Scaffold DelMOSum2011_c10000341

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10000341
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32731
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (96.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F066845	Metagenome	126	Y
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000034115	F095345	AGGA	MSELRIIKERRFYDEHGTKKFALLEEGQTVKIDSHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGFEE*
DelMOSum2011_1000034118	F019151	AGGA	MITANERAQDGLDLFEINGSQSFEMENETLKICASEDGTIHRSVRGLDVLDADGNCVFSLSWSESGVCGTLHNEDFKVEITEEF*
DelMOSum2011_1000034120	F024570	AGGA	MAYVAYEIRMTKETPTGTRHLVRCNRLGKWAITSWVGSTGSAMGSVECQGNYDYVMKNWKKIVGKYV*
DelMOSum2011_1000034121	F066845	AGGAG	MNNRKKAIAMHNASKKRFADIFTGCLAHGTLKQTQKKKKTFKLKKG*
DelMOSum2011_1000034126	F007343	AGGA	MKISDLQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYKYWEVPAFAEGRAAYCEAKQRACDTWGCE*