Scaffold DelMOSum2010_c10204327

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10204327
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 660
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015532	Metagenome / Metatranscriptome	254	Y
F030928	Metagenome	184	Y
F053545	Metagenome	141	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_102043271	F015532	GAGG	MTLIKENTRVRTEIPNRMMSATFALPIDGRRVVGIVNYTATDTGLTPLAFWVKLKPTD
DelMOSum2010_102043272	F030928	GGTGG	MKEWLKELEAYTSFCIMGFTIFICVIVIIVNCKYIIKLESTIETMWHEIEQVKETNISLFQFIEEHKNDFD*
DelMOSum2010_102043273	F083388	AGGAGG	MVGMLMQKRISNIEWVMTRCNPEFKKVWERKLEQLINRRVELAYERMVERARSVH*
DelMOSum2010_102043274	F053545	N/A	MGGKVTTHNGFVMLPIEQTRKNIEGGRESIARWSGETLPEKGK*