Scaffold DelMOSum2010_c10129240

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10129240
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 974
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F058920	Metagenome	134	N
F085566	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_101292402	F001086	AGGAG	MADKCTSWAIVATMERPDGTWYDETITEIDDDTASSVDSFLTEYCEDKEKSKHE*
DelMOSum2010_101292403	F058920	AGGAG	MSNCYDHSIKKNMMDSYCWNSKEEAKANVLQNYKQLRQWYEKECEKYKKALGGDESFDKWYEEYTGGTWEENNE*
DelMOSum2010_101292405	F085566	N/A	MIPYEIGEKIINLIEKELGGKAYFHEKYFEGMGTQFSFQLNGKLYTADLWDEDILNDV*