Scaffold DelMOSum2010_c10115216

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10115216
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1073
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Margulisbacteria → Candidatus Marinamargulisbacteria → unclassified Candidatus Marinamargulisbacteria → Candidatus Marinamargulisbacteria bacterium SCGC AAA071-K20 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003365	Metagenome / Metatranscriptome	491	Y
F019967	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_101152161	F019967	AGGAG	MKVKLESNEVEMALSVASKRFIGNLKMGKGFSYGYQGDYRKQIADSFLGALGEVAYAKAFNKFYNGSYTDNLERYTDSDFQGSIEIRTQEKKDYNFLIIRPGEKKGKYILIIHEGNFEFSILGWFPFTQDMPERLTNFGYNNRPAVYKVDIKELYNINDL*
DelMOSum2010_101152162	F003365	AGG	MLKTIGKEWTKKEEGGCFTADHMSPSQLNKSLDLWFNDYVVLTAAERKALLGNLNMDIGGIVGQAVQDMIVHNLTLEEVMKGKK*