Scaffold DelMOSum2010_c10083654

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10083654
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021188	Metagenome	220	N
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100836542	F021188	GAG	MTEELDIIWIPEGEKNHVFVENTPSGETIPVDLPASTVDRLCKAKYGHTNWVRMGAVTVEELAHNPHVIDYLEGIIYFKNPRMV*
DelMOSum2010_100836545	F030928	GGAG	MKKLWKELEAYTSFLILGFTIFICIIVIIVNCRYIIKLESTIETMWHEIVQVKETNIGLYQFIEEHKNDFD*
DelMOSum2010_100836546	F083388	GGAGG	MVGMLMQKRIANIEWVMKRCNPEFKKVWARKLEQLLERRVEIAYEKTVERARSVH*