Scaffold DelMOSum2010_c10074400

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10074400
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016691	Metagenome / Metatranscriptome	245	Y
F079339	Metagenome / Metatranscriptome	116	Y
F082763	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100744001	F079339	N/A	MSYLDYRKKVYSDLLSKIDKNGDIKSLRKYIIKEINHIEYLKSYE
DelMOSum2010_100744004	F082763	AGAAG	MTAYLEGFVTKMIEQYIPEGKDTIAHVDCREYMYEYIFQLIEEGKLPRKLSAIKYLCMNYRRFVYTNLSMLN*
DelMOSum2010_100744005	F016691	N/A	MKAGSFVECIDDKFSSAQLQQLSKIPKEGNYYTIKEIVDYPNLGRTGVRLEEISNPLIEMNGGMGEPTFNIFRFRELEIPPPMELEIREALDNDLGLETIEEDDGLLRRIRN*