Scaffold DelMOSum2010_c10071670

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10071670
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1589
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008731	Metagenome / Metatranscriptome	329	Y
F047360	Metagenome	150	Y
F067210	Metagenome	126	N
F079326	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100716703	F047360	AGGA	MKFDCIINMDNDAFANGGGLCLEDQHFELSRIIKKIASEVNEFAYSERTKTXWDTNGNKIGTWEIKV*
DelMOSum2010_100716704	F008731	AGGAG	MFVIFATKPLNDGTKGFRFNFLGLKGLTRKRKHTSRGYKINVGGCMKAIHLGKRTVYLENSSTPRKLRHFAG*
DelMOSum2010_100716705	F079326	AGG	MTRYYIATVSSDGRHANQRWLSNVDDLTDVMVQYVNEGYRVTIEEEIHQ*
DelMOSum2010_100716706	F067210	AGGAG	MITKDAIQAYNANYSGLRGAKILEFYMEQCDFDPHQYWPTFRMQKGKEVFKFILSQDPEGNGGGFAFIEDV*