Basic Information | |
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Taxon OID | 3300000101 Open in IMG/M |
Scaffold ID | DelMOSum2010_c10071670 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1589 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008731 | Metagenome / Metatranscriptome | 329 | Y |
F047360 | Metagenome | 150 | Y |
F067210 | Metagenome | 126 | N |
F079326 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
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DelMOSum2010_100716703 | F047360 | AGGA | MKFDCIINMDNDAFANGGGLCLEDQHFELSRIIKKIASEVNEFAYSERTKTXWDTNGNKIGTWEIKV* |
DelMOSum2010_100716704 | F008731 | AGGAG | MFVIFATKPLNDGTKGFRFNFLGLKGLTRKRKHTSRGYKINVGGCMKAIHLGKRTVYLENSSTPRKLRHFAG* |
DelMOSum2010_100716705 | F079326 | AGG | MTRYYIATVSSDGRHANQRWLSNVDDLTDVMVQYVNEGYRVTIEEEIHQ* |
DelMOSum2010_100716706 | F067210 | AGGAG | MITKDAIQAYNANYSGLRGAKILEFYMEQCDFDPHQYWPTFRMQKGKEVFKFILSQDPEGNGGGFAFIEDV* |
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