Scaffold DelMOSum2010_c10071188

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10071188
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1599
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F040577	Metagenome / Metatranscriptome	161	Y
F068602	Metagenome / Metatranscriptome	124	Y
F072343	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100711882	F029108	N/A	MKQINPRKYVVGKKKSGKGKVGTKGGVATRTGAFGGISKFNRKRLDKQE*
DelMOSum2010_100711886	F072343	N/A	MHTRREIDHILDDINKIIANKKTSNKESEDDKAMLKHLYDTINLKTDNGKRAKGMWTDSPEFVSIQ*
DelMOSum2010_100711887	F068602	AGGAG	MEDDDPHADEMLEKSNFIVNQLAKDIHLYSDEQIENILLMQQSMEFSLQQETTNKAIIECRNLYNYLSEITQ*
DelMOSum2010_100711888	F040577	N/A	MNELQRISAEIVEIFQNKISKLTKDQTEQLNIHNNSMNFYVQLGDEQKALWEAKHTLEYLEEITQ*