NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10062278

Scaffold DelMOSum2010_c10062278


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10062278 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1784
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F049295Metagenome147N
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_100622781F049295N/AMIEELEIEWIPEDTGAPYEMDMTRVEIDTPAHIVDKWCKKKFGHTNWARMGVMSPEELLGNPHEFDFDEGIIYFKNAHLV*
DelMOSum2010_100622782F000720GAGGMTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKELVDTLSQDNVVGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE*
DelMOSum2010_100622783F030928GGAGMKEWLKTLEAYISFCILGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD*
DelMOSum2010_100622784F083388AGGAGMVGMLMQKRIANIEWVMKRCSPDFKPVWERKLKQLINRRVEMAYERMVENARSVH*
DelMOSum2010_100622785F004988AGAAGMVKLVETICPRCNGNGYIVVQNEDIDCPMCEEDFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGE*
DelMOSum2010_100622786F003020AGGAGMPDTSSFKSVSVSVTTHNQLKTLAENRFEVPVSIQKVIDFMLEKEVKKKNGKTR*
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