Scaffold DelMOSum2010_c10057452

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10057452
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F013522	Metagenome	270	Y
F040345	Metagenome	162	Y
F101882	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100574523	F101882	AGG	MQDRVNNIDRLLMINICIDIINGTLLLQEDDDTLEMVLSNIYEDMIGYEAMGVVVGKS*
DelMOSum2010_100574524	F002249	N/A	MSKFKDYKLKDNTYSSYPYRVPVNIKALQHTKIKELQVRMMRWSAWVKDNRIPNRELDKDKWQHRFTFTLKCQKRVGELSKDELKMLNRLWKVYNDKSTDT*
DelMOSum2010_100574525	F013522	GGA	MINQQILKRIHELSKLCEDTEPTSKELMYMDKLFTQDLIDVDKMYLQVKNNAYSREEIIDIMRECNWIWKKRLKIKEIGWTEYNNIDRMIEESLRANRKIQAIKLYRHHKIDNGEECSLREAKDYIDKVQIKLGLD*
DelMOSum2010_100574527	F040345	N/A	MMKNTEHEDIITYILIGIGIGVGIGFVLKVFLDTYTIIESLPL*