Scaffold DelMOSum2010_c10057072

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10057072
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1905
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F007346	Metagenome / Metatranscriptome	353	Y
F011124	Metagenome / Metatranscriptome	295	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100570722	F007346	AGGAG	MTSNEIKGIQLSQAVKWSGQDIFEVAAAAFEDANYHSFNEVFYAAWTEFQKEYNDG*
DelMOSum2010_100570723	F002430	AGGAG	MMTIKLPKKQVNAILVALDAEIENQLGGRPVDWESFPEVAAMLMAYYTTRCKFEEENCND
DelMOSum2010_100570726	F011124	AGGAG	MFDPDKTYGTLVWDMTVAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLHERDEGGTYT*
DelMOSum2010_100570727	F049286	AGGAG	MPRYEVTRSYTVICVATVEADTHDHAEEIACDSGDIHWKEYDGDYDTEVYVEEIDNV*