Scaffold DelMOSum2010_c10045540

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10045540
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2243
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009559	Metagenome	316	Y
F021299	Metagenome / Metatranscriptome	219	N
F039389	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100455401	F009559	N/A	MNQVLLYASLIVASLSFFLCLYACGRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQT
DelMOSum2010_100455405	F039389	AGGAGG	LAFLGDIGKVFGLGSSKQVLGDVGGFIGSGLGIEGAGRRAGEAIAGATSSLSTADQPFEQSALPTGDPKQGMAQETSRSGSQTVNIIDTARGNGMTQQAGFGMLAPFISQAGKFLTSRTGQIATGVGTGALFGGMGQDSQMKPVLTQSRRNKAKVRQLVNFMGIEGAANFLSQSSGQNVTGNDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRTASTTLIKN*
DelMOSum2010_100455406	F021299	N/A	SVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG*