Scaffold DelMOSum2010_c10044406

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10044406
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2283
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F042572	Metagenome / Metatranscriptome	158	Y
F050676	Metagenome / Metatranscriptome	145	N
F058106	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100444062	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKLLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSQINKQKEIA*
DelMOSum2010_100444066	F026152	AGAAGG	MKKTKLGTPKFWTAKAWADHLLWVSGFTNNKEVNYVQSNNRRKVPRKSNKSKQSSQATV*
DelMOSum2010_100444067	F042572	AGGAG	MSRNLIIYKVEYNLKSDPWDYGNDRFKKVKRMVMTPDEVNQTDGYWRNHRNVERKFFKQMDGIEGDTYNSRYRIRRINKA*
DelMOSum2010_100444069	F058106	N/A	MTVLEQQSFIPYTESKSPEERRQYIEEQVALGNPKYQPRNTWLKENADKIRISKLEAQVNELLARFPK*