Scaffold DelMOSum2010_c10042554

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10042554
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2353
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y
F002151	Metagenome / Metatranscriptome	589	Y
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100425541	F000754	N/A	VSALVTGEPFGASENSSYTMNNMITTGAIRNRPIITFTNTTAATRTIDVAVFIGN*
DelMOSum2010_100425543	F002151	N/A	MEYVNYIALGCSIVAFSLSLIACARIGKFVKATADTDWETLANLTGDIAALKRTSQTLNNRLNGMNKATIPQEQIIQQMLEHQNVEQIRRGG*
DelMOSum2010_100425544	F030418	AGGCGG	MGFLSSIGTVLDRVVPTAIGFATGGPLGAATAAVGVERAKKTEKAIERAEFMYQQDPGLSQGFIGNAPSTSSAGSGGFFGNIGQTIGSFGRDVGGFVQDIAPALNLFGVGNQLQRTNAGAATTIIRQAPDETAQSGEILGANLGLGSNLIQAATRFARSPGGSTALGFGAGAIGAAFGGDGSSAPRITRRMKSDVRRIYNMSMGNPDITAQILNRMGTYPKISFDAATVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTTRRAPARRAAPKAVQLIKN*
DelMOSum2010_100425545	F001416	AGGAG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVAAAVDTAATSATADTTMDFTVNNAEFSRNASVSALVTGEPFGASENSSYTMNNMITT