Scaffold DelMOSum2010_c10041912

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10041912
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2379
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium TMED38 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F029289	Metagenome / Metatranscriptome	189	N
F056143	Metagenome	138	N
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100419122	F029289	GGAG	MTSAITPRYPDAASDPRLSNTADKWRTLNRQIHDKEWNGEPVTNAERDKLATLKRDLNDDKHYTPNF*
DelMOSum2010_100419123	F056143	GGAG	MGKMSDWAIQLEEDFWDTANKVVGGCEYFGQFVQEMEPYRDWLGTHNDQEHCERLRDAWDNYWSDKQ*
DelMOSum2010_100419124	F100955	GGAG	VIKKYTEEQIANAVTNCVESWDRDKLVGYASLRLYVEFMDRSRPVGDIDDLITEFGDG*
DelMOSum2010_100419126	F016757	GGAG	VTERTWEVKVEATTTREVIVHANTEYEAQIKAQIEMVGLVGGENTKVLSVKETTDE*
DelMOSum2010_100419128	F003073	AGGAG	MAKKLENMTQDERIAYFEEEREKKRINRRNRIDKLDINQRAAVIKVSEVLGEVLETALYPDMGGIKAVTAYDLQELSDAMDALQFQFNLREE*