Scaffold DelMOSum2010_c10037124

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10037124
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2593
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F008877	Metagenome	326	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100371243	F053565	N/A	MMKNYKDTYQNTLIASGKKDLSIKELEALTCLSILSVQGVIYTHYKNKQQRGNDERNGTNREVCR*
DelMOSum2010_100371244	F008386	GAGG	MSSDKQLILIILTAVAVGLWQLYQDHKQKKHDEKLQRHLSKYFDSKW*
DelMOSum2010_100371247	F008877	GGAGG	MKAKYFVSVLKILKDKYGFNFNINDTMKQAHDKIDELNTFKDIPTTNGSHLAANVIDFLKERDQKKRGDK*