Scaffold DelMOSum2010_c10032726

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10032726
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2830
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019728	Metagenome	228	Y
F052939	Metagenome	142	Y
F060425	Metagenome	133	Y
F062256	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100327262	F062256	N/A	MNEEKKNKFRAKRSVDMGSVHIEINITYSDKLACGGSVNESLPIDYTDSHTALGRKLNQTIAEYLTESDQYVVCGMNKDGSLK*
DelMOSum2010_100327263	F052939	GGA	MNIEQQIIEQIFDTLMKNDYPENFNFATDLRYDHWLDYNEKNPKTPTISLAVEKKGIPTKYEVSIREVV*
DelMOSum2010_100327266	F060425	GAGG	MNSSKIIYAELKNGSTYKYLWLGNDHFADLYNSWDYEDNEGKYKGMLDFDHTISYTFDMNQIKDQQSIIGIDIEDGLEDGEIVDFTIRNIIWEKNDE*
DelMOSum2010_100327268	F019728	AGGAG	MSKEIITKKELEKNDWTVIPKGVWFGVDFAESHKVNVLNILTDLLNLDTDAEGYNFVVCAYKKQENEDE*