Scaffold DelMOSum2010_c10025438

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10025438
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3350
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031863	Metagenome / Metatranscriptome	181	Y
F053967	Metagenome / Metatranscriptome	140	N
F056582	Metagenome / Metatranscriptome	137	Y
F057337	Metagenome / Metatranscriptome	136	N
F071664	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1002543810	F031863	AGGA	MLILIYNSMYWAKDMIPMGNDLYVVKRKFRIEHFEKVMQHFGANEVCENYHCETVLKGRDGFYYLCDKVDDAKII*
DelMOSum2010_1002543811	F071664	N/A	MIKKIKSKLLTYLFTDWVKTETDLETLKITTQMLKNREIQITGIKPVLGFRSHADTNIQ*
DelMOSum2010_100254387	F053967	N/A	MIFDPTKPLSDEELDKLAEENFDDFLDYLDQKAEHLKQFTKPLSSYMTKRYSSISTVSQGKELSNEQIKKAGDIGKENDKAEFEKIRERFEEMEKDNPKYTDEGIKNIKTHRSQWFD*
DelMOSum2010_100254388	F056582	GGA	MARFKTYKIDKTPIDSLPEMVTISKKVKGEIFEKKFINIDKAKAWIEFGAATKLIARGAKKVKGELGSIGLISDTAW*
DelMOSum2010_100254389	F057337	N/A	MTYSELNQMTMSDLRNLNSMVVQTINNKKTLEGMEKKSSLYVGALVSVDHKKMAGHELRITKINRTKAVCEMVNGRGTYNIPLEMINIING*