Scaffold DelMOSum2010_c10024329

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10024329
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3457
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100243291	F047922	GAGG	MTPQEIVDHKNKWKMANYFESHTHSDLRSEATQWCKDHCFKWRYDIKHFTDIYGDTVKFELEEDFTA
DelMOSum2010_100243292	F005352	AGGAG	MTHPALDKPYIQLICNPYEHSTSVNTRITIDVMQKDLSRDDMIEVLENFMKSMGYHFNPNECLGIEEHE*
DelMOSum2010_100243294	F025150	GGAG	MINVQTEGRDLSKYSSFIDECIMSLFPEDATYDIYFEVKKFVDKDGSHAGFCMGDDIESVISLATHWVYEDGEEIAYEPHELASNIAHELVHAKQFYRGQINMVDNVWKHNNVMIDCDTINYEDLPWEVEAYAYEVILTDLLWENV*
DelMOSum2010_100243298	F084734	N/A	MKKYKRKPWTDEERKILATHYFYQDIESIMYMLPGRTEQSIRNQVSYLRKRGYRFKK*
DelMOSum2010_100243299	F005796	GGAG	MLELAVFMFCTLGCGLTSYHLGKQEGIETTIEHLVDHGMLELDEE*