Scaffold DelMOSum2010_c10024214

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10024214
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3470
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027520	Metagenome	194	Y
F034138	Metagenome	175	Y
F047068	Metagenome	150	N
F054042	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100242141	F047068	AGAAG	MIKIVTDEEVHEMDIELIELFAVYLFDKDIVGMTDLIYVVEDRMAGDYFEDEK*
DelMOSum2010_1002421410	F054042	GAGG	MIEEQTPFIQIVFEEIEEYGLYDLKLKLFNLLEAAMYGQAGKARKEIDALWLEIQDYKAELTIPPDERLLALHHPTMSV*
DelMOSum2010_100242144	F034138	GAGG	MRAIVEFRESVYGPVLAEYNVAGRGHNHIQEKCALWGQMQSYGYWSIVYNLTSAKFDKLMQKHGTPYIQKRGK*
DelMOSum2010_100242146	F027520	GGA	MNSALRNQILAERRRDRRNDIIASVIGWTVTIAGAFIGAALFYTVTFTFLSIGL*