Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10023581 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10023581 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3530
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3530

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100235812	F002374	N/A	MNQVLLYASVILATVSFFLCCYACVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLTYAIKQQNGAMHPPKTTLGG*
DelMOSum2010_100235814	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVSSAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGAYINNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGVFIGG*
DelMOSum2010_100235815	F013311	AGGAGG	LAFLGDFGKFFGLGSSEEVLGDVGQAVGTFVGGPVGGKIGESIGETIGSATSSLGGSNVSPASTADQALEQSAVPVSQRGDVPQETSMMTGTTGMTTQAGFGSLLPSIIGGARSAFPQIGKFIGTPTGAIATGVGTSFGVNMLTGSDMSRMKPVLTQSRRNKARVRQLVNFMGIDGAAQFLSQASGKRISGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN*
DelMOSum2010_100235816	F002374	N/A	MNQVLLYASVILATVSFFLCCYACVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQTNVTDINKKILGG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10023581

Overview

Ecosystem & Geography

Associated Families

Sequences