Scaffold DelMOSum2010_c10023286

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10023286
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3559
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F014447	Metagenome	263	Y
F018196	Metagenome / Metatranscriptome	236	N
F024675	Metagenome	205	N
F049758	Metagenome	146	Y
F067644	Metagenome / Metatranscriptome	125	N
F080519	Metagenome / Metatranscriptome	115	Y
F085805	Metagenome	111	N
F099992	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1002328610	F067644	AGGAG	MLKKEMSIKEFVSLPEIQTLIDEGMMTVNAIDEQEEIYDENIDEFVEEINKTGMLK*
DelMOSum2010_1002328611	F085805	AGGAGG	MKSKSISKDADRIVSGLLVCKPLADEVYKKLRMLALKDEEEFRNNRYQERVKANNNWNCGG*
DelMOSum2010_1002328612	F018196	GGAGG	MTSEEIIKAVDYKKGHFNMVQYILREKPEWSISVYDIEEDRFSVEKSKDYQQIKKAIKDYQTEIICYSKEDKRIGWAWFIPYNETDEDIVSDYSDTLTLNAWCKQFEELHKQLEVA*
DelMOSum2010_1002328613	F024675	GGAGG	MKKYNQYSLENYFKILEIQTGRKNPSDIMEFLEEQYFSKSKETYVKYKDMDITHLIRVMLNASDDVVNHVYKNDTLIEEVKRLQDKIKKLTKVLEN*
DelMOSum2010_100232862	F014447	N/A	LPHCYFIVFLMINTNINKHNYKAYGIQSHREFRKFKKRLLLDLSNNPLTLSXYYKPVKSAIYNNLNMSVQGGKSKNARYNHSL*
DelMOSum2010_100232863	F049758	GGAG	MYYIILWLSLIFGSVFSIINNEIYLSLSLFLIFAVNVAYNFNK*
DelMOSum2010_100232865	F099992	GGAGG	MIQAQINLPLYDNDGKSVKKVHKQLEVELCSKFGGCTTSSGRGKWLDKGKLYNDSLNIYQVAIDKKFKNLFIKIAKKYGIETRQLAIYTVINGQVKIINI*
DelMOSum2010_100232866	F080519	GGAGG	MKQCKICDDKPKKIYSQCFNTYICEPCMNEHGDTHHEKIGTGVYPNNYIPSDYYTLINNK
DelMOSum2010_100232867	F002485	AGGAG	MRKQVDQKSLYVERSGDREIYYSYNTTVAVKTPIETYVCENVWSMTTAKHLNRIEELTGSDREYRMRYKDFRNFCINNNVNKHYI*