Scaffold DelMOSum2010_c10022963

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10022963
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3590
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F013234	Metagenome	273	N
F089158	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100229632	F013234	N/A	MANIRYNKTIEKKILERLCNGESIRKICKDPEMVSWPTFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ*
DelMOSum2010_100229635	F005038	N/A	MKAKDINIYNIFSATYKRNLFSFNGFGELSLMPKVKKPIRQISNVYQFPILRTYNQKRRVK*
DelMOSum2010_100229637	F089158	GAGG	MKESKVKWHGQDNYNMNCDIKELEKLGFENSSWHNDLAPSYTNKKGNVQIFFFDLDNDEMKSEQRKFKYSLMKLDEHGEYLDGIGQTNSFDEMIELVKKNEND*
DelMOSum2010_100229639	F004629	AGGAGG	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPKMKIRLNGEQLQVYEFCILLLVKANEKDRDIIQLRNFPYKRSFRILKRFFMPISHEQCRIKYYNALYELLKLYHLKGRGYFLK*