Scaffold DelMOSum2010_c10021822

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10021822
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3717
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023955	Metagenome	208	Y
F064099	Metagenome / Metatranscriptome	129	N
F081757	Metagenome	114	N
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100218223	F081757	GGAGG	MIRYIINLYMLTCTVVVTSWLLASVAYATHGEEHGPGWHSSNCDSQPWLEDQAEFCNMMGLEIKILDHHDYKIWEFDDSYLITYKDEVVLQWDCILDSNTTPGNRFFCAVMMDYDYDRLESYTND*
DelMOSum2010_100218224	F064099	N/A	MTNVYRLIIIILLVYIIWVDHRYVQVGWCESEIDVLRNTIAEIHTLVSE*
DelMOSum2010_100218226	F098062	AGGA	MSTQKEMYGQTKDSVIAQFRKVKPLYAGRSNLYIMGILSDAQMMIDAKQYKTANQFINKAKLLLSTKCK*
DelMOSum2010_100218228	F023955	AGGA	MKVIHNIMLVKDNDDIEYHDVEGEWNEEGSGGPSFEPLYKLLDCKLIEIAYGMLPDSTKEYPIFLNEEGLYKEDNEMNPFATLMQRRWCKANNRMQISPIVGDVAVDLGLNADSLTKVSTEMELQNNERKDNTTEA*