Scaffold DelMOSum2010_c10021645

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10021645
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3738
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F001416	Metagenome / Metatranscriptome	699	Y
F003678	Metagenome / Metatranscriptome	474	Y
F106095	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100216451	F001416	AGGAG	MPLVKKRLSIAAGATSDQVLTGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTG
DelMOSum2010_100216452	F106095	GGTGG	MSFLSNLIKKAAPVVATVAAGTPIGTAARVVTVAQEQQERKYQKKLAIDRQAAKEKQMSEIFGSGSYGLGRVQSPMTGSRVQTNNAGFGSSFGSFLGDIGSNIVGPFSALFSQVRPFISQQSTGQPALPTRTNFGGQESQSSGVTEGFVGGIPNVLGQAAKFLRTPQGQIGTGLLTGIGGSMLAGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDQFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKSPMRRASTTLISNK*
DelMOSum2010_100216453	F003678	GGA	MLYAPLIIASIALFLCLYACVRVGQFINASKELDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG*
DelMOSum2010_100216455	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLTGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYTMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG*