Scaffold DelMOSum2010_c10019813

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10019813
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3957
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F065797	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001981310	F008307	AGCAG	MVKVIKKSNLELTVDFEEIFDGATVEEATEKAHNQKMPSEFAKANITDNKLISANIKIIGEENNELKK*
DelMOSum2010_1001981312	F005537	AGG	MSDNVKFISEIERLLKEKQDDYGEFDHTSYIMSGILEKYLSVHNNCEVKVPLKLFGIFMIFLKLWRVMQSENYKKDSFDDINGYAELLRRLVLNEQDRKR*
DelMOSum2010_1001981314	F002495	GGAGG	MQNNGSGKQKDFVLFPYDANNEKAIKIDFSGNVTLDNGNKGTILGAKAASKDGKTKFVRVFAQIGVLFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEYKPKQAKTQSKEIPF*
DelMOSum2010_100198136	F065797	AGGA	VSKKSWVRKEKIVFVGNCKYCKSEMTSEDSFIPIGKIVRGKYQYQNAHYDCVRENDHKPKTNFDW*
DelMOSum2010_100198139	F043149	AGGAG	MSLRNSNIRLYTKLDNAHKKIMGAKDKGRQCVHTLQDFKEYNQLFRRIVEAENKDARFLYT*