Scaffold DelMOSum2010_c10019808

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10019808
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3958
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F067644	Metagenome / Metatranscriptome	125	N
F085805	Metagenome	111	N
F092191	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100198082	F002485	N/A	MRNQIDQKSLYVERSGDREIYYSYNTTVAVKTPIETYVCENVWSMTTAKHLNRIEELTGSDREYRMRYKDFRNFCINNNVNKHYI*
DelMOSum2010_100198084	F067644	AGGAG	MFKKEMSIKEFIEQPEIQTLIDKGMMTVNAIDEQEEIYDENIDEFVEEINKTGMLK*
DelMOSum2010_100198086	F085805	AGGAG	MKSKSISKDADXIVSGLLVCKPLADEVYXKLRXLALKDEEDFRNNRIAERHRLNNGYSKGGH*
DelMOSum2010_100198087	F092191	AGGAGG	MKLKQIVDITKILSDRKIPDDVIKFLDDEYYSISKKQNIKFGEMDLLHYIRVNIKDHKNLWKSYNEVEERLHKIKKIMED*