Scaffold DelMOSum2010_c10019352

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10019352
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4019
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F023845	Metagenome	208	Y
F041145	Metagenome	160	N
F059445	Metagenome	134	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100193522	F012123	AGGA	MIKRNPCRVKKVTYDQDGMKIVEQRGYAQERKTIDGEESVFVMEGGDTGIGYWYPKNEVTFVHSGWRNKTSEPSKKSYWRRAK*
DelMOSum2010_100193523	F098210	GGAGG	LPLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFDFDDNYKVRPRTNIERELDKLTDLNNKEKDLPVGGDDGQEIFNSQLNQLVWDLGLSLPSWDDDHNERNNNDKT*
DelMOSum2010_100193524	F059445	GGAG	MNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNDNQLKDVLGNSIEGPPKGQAWKEEGDEEEIKAIKSLMEGNIAIA*
DelMOSum2010_100193526	F041145	AGAAG	LSKPANINYDNLVAKLEMLVKLCEETEPTRKQLWKMSGEKHADVTDLFTPELIDAKFYLQEVKEQEYDNYSVVDIMKACNTMWRWRLKVKKDGWPDMSSIEYRCGELIRANKKITAIKEYRTYMDNRNKEVSLRQAKDWVDRLSIKMDLD*
DelMOSum2010_100193527	F023845	N/A	MSLLTYYKSTHDDIEKLIEDHVKECRRSIPWSGENKTVVRNIINIFKKTH*