Scaffold DelMOSum2010_c10018717

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10018717
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4106
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F059361	Metagenome	134	Y
F083382	Metagenome	113	N
F097155	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100187173	F059361	AGGAG	MIDDAITTVGFALQSYINICEEDAKNSGEDIEETKAEREELTLAWSIIKSHLNMSDDVSDNNLQPQRGH*
DelMOSum2010_100187175	F097155	GGAG	MKSNKYYIDTPSFLEVTSKLADFMMQEKLGEKYYENCIYVDEDDVYNYTDEGQEIFNNYIDQMTRILNEVDIVDEDQLQQGE*
DelMOSum2010_100187177	F083382	AGGA	MXKVDRDTLVSVDDAGDVAKKEYESYIKQQEEVVDDLDNQEYSEGEKYD*
DelMOSum2010_100187178	F019393	N/A	MYKEIETYKDVDSFIEAHDGLWQMLGAKYKKLXXETVVIDNTTWKLKKGNMSXLK*
DelMOSum2010_100187179	F048575	AGGAG	MTALQNSIILDEEYEYEVSVVDLWESQGIKEPYDAIAVAMNTLAYPNPNVPDEEIEEHLSELWEEKWHHHYV*